.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "content/examples/10-pgi/plot_inv_0_PGI_Linear_1D.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code .. rst-class:: sphx-glr-example-title .. _sphx_glr_content_examples_10-pgi_plot_inv_0_PGI_Linear_1D.py: Petrophysically guided inversion (PGI): Linear example ====================================================== We do a comparison between the classic least-squares inversion and our formulation of a petrophysically constrained inversion. We explore it through the UBC linear example. .. GENERATED FROM PYTHON SOURCE LINES 12-14 Tikhonov Inversion# #################### .. GENERATED FROM PYTHON SOURCE LINES 14-90 .. code-block:: default import discretize as Mesh import matplotlib.pyplot as plt import numpy as np from SimPEG import ( data_misfit, directives, inverse_problem, inversion, maps, optimization, regularization, simulation, utils, ) # Random seed for reproductibility np.random.seed(1) # Mesh N = 100 mesh = Mesh.TensorMesh([N]) # Survey design parameters nk = 20 jk = np.linspace(1.0, 60.0, nk) p = -0.25 q = 0.25 # Physics def g(k): return np.exp(p * jk[k] * mesh.cell_centers_x) * np.cos( np.pi * q * jk[k] * mesh.cell_centers_x ) G = np.empty((nk, mesh.nC)) for i in range(nk): G[i, :] = g(i) # True model mtrue = np.zeros(mesh.nC) mtrue[mesh.cell_centers_x > 0.2] = 1.0 mtrue[mesh.cell_centers_x > 0.35] = 0.0 t = (mesh.cell_centers_x - 0.65) / 0.25 indx = np.abs(t) < 1 mtrue[indx] = -(((1 - t**2.0) ** 2.0)[indx]) mtrue = np.zeros(mesh.nC) mtrue[mesh.cell_centers_x > 0.3] = 1.0 mtrue[mesh.cell_centers_x > 0.45] = -0.5 mtrue[mesh.cell_centers_x > 0.6] = 0 # SimPEG problem and survey prob = simulation.LinearSimulation(mesh, G=G, model_map=maps.IdentityMap()) std = 0.01 survey = prob.make_synthetic_data(mtrue, relative_error=std, add_noise=True) # Setup the inverse problem reg = regularization.WeightedLeastSquares(mesh, alpha_s=1.0, alpha_x=1.0) dmis = data_misfit.L2DataMisfit(data=survey, simulation=prob) opt = optimization.ProjectedGNCG(maxIter=10, maxIterCG=50, tolCG=1e-4) invProb = inverse_problem.BaseInvProblem(dmis, reg, opt) directiveslist = [ directives.BetaEstimate_ByEig(beta0_ratio=1e-5), directives.BetaSchedule(coolingFactor=10.0, coolingRate=2), directives.TargetMisfit(), ] inv = inversion.BaseInversion(invProb, directiveList=directiveslist) m0 = np.zeros_like(mtrue) mnormal = inv.run(m0) .. rst-class:: sphx-glr-script-out .. code-block:: none SimPEG.InvProblem will set Regularization.reference_model to m0. SimPEG.InvProblem will set Regularization.reference_model to m0. SimPEG.InvProblem will set Regularization.reference_model to m0. SimPEG.InvProblem is setting bfgsH0 to the inverse of the eval2Deriv. ***Done using the default solver Pardiso and no solver_opts.*** model has any nan: 0 =============================== Projected GNCG =============================== # beta phi_d phi_m f |proj(x-g)-x| LS Comment ----------------------------------------------------------------------------- x0 has any nan: 0 0 1.86e+01 1.00e+05 0.00e+00 1.00e+05 1.26e+06 0 1 1.86e+01 2.17e+01 2.28e+01 4.46e+02 3.69e-06 0 ------------------------- STOP! ------------------------- 0 : |fc-fOld| = 9.9554e+04 <= tolF*(1+|f0|) = 1.0000e+04 0 : |xc-x_last| = 4.0057e+00 <= tolX*(1+|x0|) = 1.0000e-01 1 : |proj(x-g)-x| = 3.6852e-06 <= tolG = 1.0000e-01 1 : |proj(x-g)-x| = 3.6852e-06 <= 1e3*eps = 1.0000e-02 0 : maxIter = 10 <= iter = 1 ------------------------- DONE! ------------------------- .. GENERATED FROM PYTHON SOURCE LINES 91-93 Petrophysically constrained inversion # ######################################## .. GENERATED FROM PYTHON SOURCE LINES 93-168 .. code-block:: default # fit a Gaussian Mixture Model with n components # on the true model to simulate the laboratory # petrophysical measurements n = 3 clf = utils.WeightedGaussianMixture( mesh=mesh, n_components=n, covariance_type="full", max_iter=100, n_init=3, reg_covar=5e-4, ) clf.fit(mtrue.reshape(-1, 1)) # Petrophyically constrained regularization reg = regularization.PGI( gmmref=clf, mesh=mesh, alpha_pgi=1.0, alpha_x=1.0, ) # Optimization opt = optimization.ProjectedGNCG(maxIter=20, maxIterCG=50, tolCG=1e-4) opt.remember("xc") # Setup new inverse problem invProb = inverse_problem.BaseInvProblem(dmis, reg, opt) # directives Alphas = directives.AlphasSmoothEstimate_ByEig(alpha0_ratio=10.0, verbose=True) beta = directives.BetaEstimate_ByEig(beta0_ratio=1e-8) betaIt = directives.PGI_BetaAlphaSchedule( verbose=True, coolingFactor=2.0, warmingFactor=1.0, tolerance=0.1, update_rate=1, progress=0.2, ) targets = directives.MultiTargetMisfits(verbose=True) petrodir = directives.PGI_UpdateParameters() addmref = directives.PGI_AddMrefInSmooth(verbose=True) # Setup Inversion inv = inversion.BaseInversion( invProb, directiveList=[Alphas, beta, petrodir, targets, addmref, betaIt] ) # Initial model same as for WeightedLeastSquares mcluster = inv.run(m0) # Final Plot fig, axes = plt.subplots(1, 3, figsize=(12 * 1.2, 4 * 1.2)) for i in range(prob.G.shape[0]): axes[0].plot(prob.G[i, :]) axes[0].set_title("Columns of matrix G") axes[1].hist(mtrue, bins=20, linewidth=3.0, density=True, color="k") axes[1].set_xlabel("Model value") axes[1].set_xlabel("Occurence") axes[1].hist(mnormal, bins=20, density=True, color="b") axes[1].hist(mcluster, bins=20, density=True, color="r") axes[1].legend(["Mtrue Hist.", "L2 Model Hist.", "PGI Model Hist."]) axes[2].plot(mesh.cell_centers_x, mtrue, color="black", linewidth=3) axes[2].plot(mesh.cell_centers_x, mnormal, color="blue") axes[2].plot(mesh.cell_centers_x, mcluster, "r-") axes[2].plot(mesh.cell_centers_x, invProb.reg.objfcts[0].reference_model, "r--") axes[2].legend(("True Model", "L2 Model", "PGI Model", "Learned Mref")) axes[2].set_ylim([-2, 2]) plt.show() .. image-sg:: /content/examples/10-pgi/images/sphx_glr_plot_inv_0_PGI_Linear_1D_001.png :alt: Columns of matrix G :srcset: /content/examples/10-pgi/images/sphx_glr_plot_inv_0_PGI_Linear_1D_001.png :class: sphx-glr-single-img .. rst-class:: sphx-glr-script-out .. code-block:: none SimPEG.InvProblem will set Regularization.reference_model to m0. SimPEG.InvProblem will set Regularization.reference_model to m0. SimPEG.InvProblem is setting bfgsH0 to the inverse of the eval2Deriv. ***Done using the default solver Pardiso and no solver_opts.*** Alpha scales: [0.5191737316982674, 0.0] model has any nan: 0 =============================== Projected GNCG =============================== # beta phi_d phi_m f |proj(x-g)-x| LS Comment ----------------------------------------------------------------------------- x0 has any nan: 0 0 3.29e-02 1.00e+05 0.00e+00 1.00e+05 1.26e+06 0 geophys. misfits: 5.9 (target 10.0 [True]) | smallness misfit: 1923.0 (target: 50.0 [False]) mref changed in 26 places Beta cooling evaluation: progress: [5.9]; minimum progress targets: [80000.] Warming alpha_pgi to favor clustering: 1.6861710127265288 1 3.29e-02 5.93e+00 4.66e+01 7.47e+00 2.89e+00 0 geophys. misfits: 6.0 (target 10.0 [True]) | smallness misfit: 928.5 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [6.]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 2.8181460613013196 2 3.29e-02 5.98e+00 4.47e+01 7.46e+00 9.76e+01 0 Skip BFGS geophys. misfits: 6.1 (target 10.0 [True]) | smallness misfit: 660.4 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [6.1]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 4.6472403764853265 3 3.29e-02 6.06e+00 5.25e+01 7.79e+00 9.03e+00 0 Skip BFGS geophys. misfits: 6.2 (target 10.0 [True]) | smallness misfit: 460.0 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [6.2]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 7.54373961924057 4 3.29e-02 6.16e+00 6.08e+01 8.16e+00 1.75e+00 0 geophys. misfits: 6.3 (target 10.0 [True]) | smallness misfit: 311.1 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [6.3]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 12.03343537217359 5 3.29e-02 6.27e+00 6.91e+01 8.54e+00 3.03e+00 0 geophys. misfits: 6.4 (target 10.0 [True]) | smallness misfit: 210.7 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [6.4]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 18.85589407480344 6 3.29e-02 6.38e+00 7.74e+01 8.93e+00 2.08e+00 0 geophys. misfits: 6.5 (target 10.0 [True]) | smallness misfit: 146.1 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [6.5]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 29.015991427488434 7 3.29e-02 6.50e+00 8.62e+01 9.34e+00 2.68e+00 0 geophys. misfits: 6.6 (target 10.0 [True]) | smallness misfit: 106.3 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [6.6]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 43.78996576616381 8 3.29e-02 6.63e+00 9.57e+01 9.78e+00 4.88e+00 0 geophys. misfits: 6.8 (target 10.0 [True]) | smallness misfit: 81.9 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [6.8]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 64.69673728244304 9 3.29e-02 6.77e+00 1.06e+02 1.03e+01 2.13e+01 0 geophys. misfits: 6.9 (target 10.0 [True]) | smallness misfit: 66.4 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [6.9]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 93.33898811414642 10 3.29e-02 6.93e+00 1.19e+02 1.08e+01 4.86e+00 0 geophys. misfits: 7.1 (target 10.0 [True]) | smallness misfit: 56.0 (target: 50.0 [False]) mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [7.1]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 131.11899078035825 11 3.29e-02 7.12e+00 1.32e+02 1.15e+01 5.89e+00 0 geophys. misfits: 7.3 (target 10.0 [True]) | smallness misfit: 48.6 (target: 50.0 [True]) All targets have been reached mref changed in 0 places Add mref to Smoothness. Changes in mref happened in 0.0 % of the cells Beta cooling evaluation: progress: [7.3]; minimum progress targets: [11.] Warming alpha_pgi to favor clustering: 178.84903134969392 ------------------------- STOP! ------------------------- 1 : |fc-fOld| = 0.0000e+00 <= tolF*(1+|f0|) = 1.0000e+04 1 : |xc-x_last| = 2.6599e-02 <= tolX*(1+|x0|) = 1.0000e-01 0 : |proj(x-g)-x| = 5.8875e+00 <= tolG = 1.0000e-01 0 : |proj(x-g)-x| = 5.8875e+00 <= 1e3*eps = 1.0000e-02 0 : maxIter = 20 <= iter = 12 ------------------------- DONE! ------------------------- .. rst-class:: sphx-glr-timing **Total running time of the script:** (0 minutes 9.716 seconds) **Estimated memory usage:** 10 MB .. _sphx_glr_download_content_examples_10-pgi_plot_inv_0_PGI_Linear_1D.py: .. only:: html .. container:: sphx-glr-footer sphx-glr-footer-example .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: plot_inv_0_PGI_Linear_1D.py ` .. container:: sphx-glr-download sphx-glr-download-jupyter :download:`Download Jupyter notebook: plot_inv_0_PGI_Linear_1D.ipynb ` .. only:: html .. rst-class:: sphx-glr-signature `Gallery generated by Sphinx-Gallery `_