.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "content/user-guide/examples/01-maps/plot_sumMap.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code. .. rst-class:: sphx-glr-example-title .. _sphx_glr_content_user-guide_examples_01-maps_plot_sumMap.py: Maps: ComboMaps =============== Invert synthetic magnetic data with variable background values and a single block anomaly buried at depth. We will use the Sum Map to invert for both the background values and an heterogeneous susceptibiilty model. .. code-block:: python :linenos: .. GENERATED FROM PYTHON SOURCE LINES 15-208 .. rst-class:: sphx-glr-horizontal * .. image-sg:: /content/user-guide/examples/01-maps/images/sphx_glr_plot_sumMap_001.png :alt: plot sumMap :srcset: /content/user-guide/examples/01-maps/images/sphx_glr_plot_sumMap_001.png :class: sphx-glr-multi-img * .. image-sg:: /content/user-guide/examples/01-maps/images/sphx_glr_plot_sumMap_002.png :alt: plot sumMap :srcset: /content/user-guide/examples/01-maps/images/sphx_glr_plot_sumMap_002.png :class: sphx-glr-multi-img .. rst-class:: sphx-glr-script-out .. code-block:: none /home/vsts/work/1/s/simpeg/utils/model_builder.py:37: BreakingChangeWarning: Since SimPEG v0.25.0, the 'get_indices_block' function returns a single array with the cell indices, instead of a tuple with a single element. This means that we don't need to unpack the tuple anymore to access to the cell indices. If you were using this function as in: ind = get_indices_block(p0, p1, mesh.cell_centers)[0] Make sure you update it to: ind = get_indices_block(p0, p1, mesh.cell_centers) To hide this warning, add this to your script or notebook: import warnings from simpeg.utils import BreakingChangeWarning warnings.filterwarnings(action='ignore', category=BreakingChangeWarning) Running inversion with SimPEG v0.25.0 ================================================= Projected GNCG ================================================= # beta phi_d phi_m f |proj(x-g)-x| LS iter_CG CG |Ax-b|/|b| CG |Ax-b| Comment ----------------------------------------------------------------------------------------------------------------- 0 6.10e+05 9.11e+06 4.27e-04 9.12e+06 0 inf inf 1 6.10e+05 1.38e+05 7.05e-02 1.81e+05 6.29e+01 0 3 8.33e-04 1.14e+06 2 3.05e+05 5.01e+04 2.22e-01 1.18e+05 3.51e+01 0 9 6.62e-04 2.82e+04 3 1.53e+05 2.17e+04 3.52e-01 7.54e+04 4.92e+01 0 10 4.88e-02 7.51e+04 4 7.63e+04 7.17e+03 4.69e-01 4.30e+04 5.45e+01 0 9 5.98e-04 5.90e+03 5 3.81e+04 4.19e+03 5.45e-01 2.50e+04 4.81e+01 0 10 7.37e-03 3.99e+03 6 1.91e+04 1.04e+03 6.01e-01 1.25e+04 3.64e+01 0 5 7.96e-04 1.49e+04 7 9.53e+03 1.04e+03 6.01e-01 6.77e+03 4.84e+01 6 10 7.49e-02 1.17e+04 8 4.77e+03 4.50e+02 6.52e-01 3.56e+03 4.99e+01 0 10 3.36e-02 1.51e+04 9 2.38e+03 4.39e+02 6.55e-01 2.00e+03 3.47e+01 2 10 2.17e-01 4.68e+04 10 1.19e+03 3.85e+02 6.78e-01 1.19e+03 3.52e+01 0 10 3.94e-02 4.15e+04 Reached starting chifact with l2-norm regularization: Start IRLS steps... irls_threshold 0.010189656410434683 irls_threshold 0.012262010220335882 11 1.19e+03 3.85e+02 9.25e-01 1.49e+03 6.23e+01 12 10 3.27e-02 4.66e+04 12 1.19e+03 3.90e+02 9.77e-01 1.55e+03 6.23e+01 4 10 1.41e-01 2.01e+05 13 1.19e+03 4.02e+02 1.01e+00 1.60e+03 3.41e+01 1 10 1.67e+00 1.19e+05 14 1.19e+03 3.96e+02 1.02e+00 1.61e+03 3.62e+01 0 10 6.49e-02 1.06e+05 15 1.19e+03 3.96e+02 1.06e+00 1.66e+03 5.81e+01 8 10 4.54e-01 2.00e+05 16 1.19e+03 4.01e+02 1.05e+00 1.65e+03 5.84e+01 3 10 3.71e-01 1.78e+05 17 1.19e+03 4.11e+02 1.00e+00 1.60e+03 3.24e+01 0 10 9.26e-02 3.43e+04 18 1.19e+03 4.20e+02 9.80e-01 1.59e+03 3.48e+01 2 10 2.53e-01 2.03e+05 19 1.19e+03 4.27e+02 9.36e-01 1.54e+03 6.10e+01 3 10 1.93e-01 2.60e+05 20 1.19e+03 4.37e+02 8.66e-01 1.47e+03 6.14e+01 2 10 5.11e-02 8.37e+04 21 1.19e+03 4.40e+02 7.75e-01 1.36e+03 3.51e+01 0 10 1.35e-01 1.75e+05 22 1.19e+03 4.52e+02 7.40e-01 1.33e+03 3.12e+01 2 10 7.50e-02 1.99e+04 23 9.74e+02 4.30e+02 6.79e-01 1.09e+03 6.10e+01 0 10 1.20e-02 1.57e+04 24 9.74e+02 4.39e+02 6.27e-01 1.05e+03 3.18e+01 2 10 5.60e-01 1.05e+05 25 9.74e+02 4.42e+02 5.47e-01 9.75e+02 3.59e+01 0 10 1.06e-02 1.17e+04 26 8.07e+02 4.40e+02 4.93e-01 8.37e+02 6.11e+01 0 10 8.67e-03 7.87e+03 27 6.69e+02 4.19e+02 4.33e-01 7.08e+02 6.22e+01 1 10 1.29e-02 2.29e+04 28 6.69e+02 4.08e+02 3.75e-01 6.59e+02 3.41e+01 0 10 8.67e-02 3.43e+04 29 6.69e+02 4.09e+02 3.05e-01 6.13e+02 3.35e+01 0 10 3.49e-02 6.62e+03 30 6.69e+02 4.05e+02 2.52e-01 5.74e+02 6.20e+01 0 10 5.50e-03 4.65e+03 Reach maximum number of IRLS cycles: 20 ------------------------- STOP! ------------------------- 1 : |fc-fOld| = 1.0710e+01 <= tolF*(1+|f0|) = 9.1151e+05 1 : |xc-x_last| = 3.4604e-03 <= tolX*(1+|x0|) = 1.0075e-01 0 : |proj(x-g)-x| = 6.2007e+01 <= tolG = 1.0000e-03 0 : |proj(x-g)-x| = 6.2007e+01 <= 1e3*eps = 1.0000e-03 0 : maxIter = 100 <= iter = 30 ------------------------- DONE! ------------------------- | .. code-block:: Python from discretize import TensorMesh from discretize.utils import active_from_xyz from simpeg import ( utils, maps, regularization, data_misfit, optimization, inverse_problem, directives, inversion, ) from simpeg.potential_fields import magnetics import numpy as np import matplotlib.pyplot as plt def run(plotIt=True): h0_amplitude, h0_inclination, h0_declination = (50000.0, 90.0, 0.0) # Create a mesh dx = 5.0 hxind = [(dx, 5, -1.3), (dx, 10), (dx, 5, 1.3)] hyind = [(dx, 5, -1.3), (dx, 10), (dx, 5, 1.3)] hzind = [(dx, 5, -1.3), (dx, 10)] mesh = TensorMesh([hxind, hyind, hzind], "CCC") # Lets create a simple Gaussian topo and set the active cells [xx, yy] = np.meshgrid(mesh.nodes_x, mesh.nodes_y) zz = -np.exp((xx**2 + yy**2) / 75**2) + mesh.nodes_z[-1] # We would usually load a topofile topo = np.c_[utils.mkvc(xx), utils.mkvc(yy), utils.mkvc(zz)] # Go from topo to array of indices of active cells actv = active_from_xyz(mesh, topo, "N") nC = int(actv.sum()) # Create and array of observation points xr = np.linspace(-20.0, 20.0, 20) yr = np.linspace(-20.0, 20.0, 20) X, Y = np.meshgrid(xr, yr) # Move the observation points 5m above the topo Z = -np.exp((X**2 + Y**2) / 75**2) + mesh.nodes_z[-1] + 5.0 # Create a MAGsurvey rxLoc = np.c_[utils.mkvc(X.T), utils.mkvc(Y.T), utils.mkvc(Z.T)] rxLoc = magnetics.Point(rxLoc) srcField = magnetics.UniformBackgroundField( receiver_list=[rxLoc], amplitude=h0_amplitude, inclination=h0_inclination, declination=h0_declination, ) survey = magnetics.Survey(srcField) # We can now create a susceptibility model and generate data model = np.zeros(mesh.nC) # Change values in half the domain model[mesh.gridCC[:, 0] < 0] = 0.01 # Add a block in half-space model = utils.model_builder.add_block( mesh.gridCC, model, np.r_[-10, -10, 20], np.r_[10, 10, 40], 0.05 ) model = utils.mkvc(model) model = model[actv] # Create active map to go from reduce set to full actvMap = maps.InjectActiveCells(mesh, actv, np.nan) # Create reduced identity map idenMap = maps.IdentityMap(nP=nC) # Create the forward model operator prob = magnetics.Simulation3DIntegral( mesh, survey=survey, chiMap=idenMap, active_cells=actv, store_sensitivities="forward_only", ) # Compute linear forward operator and compute some data data = prob.make_synthetic_data( model, relative_error=0.0, noise_floor=1, add_noise=True ) # Create a homogenous maps for the two domains domains = [mesh.gridCC[actv, 0] < 0, mesh.gridCC[actv, 0] >= 0] homogMap = maps.SurjectUnits(domains) # Create a wire map for a second model space, voxel based wires = maps.Wires(("homo", len(domains)), ("hetero", nC)) # Create Sum map sumMap = maps.SumMap([homogMap * wires.homo, wires.hetero]) # Create the forward model operator prob = magnetics.Simulation3DIntegral( mesh, survey=survey, chiMap=sumMap, active_cells=actv, store_sensitivities="ram" ) # Make sensitivity weighting # Take the cell number out of the scaling. # Want to keep high sens for large volumes wr = ( prob.getJtJdiag(np.ones(sumMap.shape[1])) / np.r_[homogMap.P.T * mesh.cell_volumes[actv], mesh.cell_volumes[actv]] ** 2.0 ) # Scale the model spaces independently wr[wires.homo.index] /= np.max((wires.homo * wr)) * utils.mkvc( homogMap.P.sum(axis=0).flatten() ) wr[wires.hetero.index] /= np.max(wires.hetero * wr) wr = wr**0.5 ## Create a regularization # For the homogeneous model regMesh = TensorMesh([len(domains)]) reg_m1 = regularization.Sparse(regMesh, mapping=wires.homo) reg_m1.set_weights(weights=wires.homo * wr) reg_m1.norms = [0, 2] reg_m1.reference_model = np.zeros(sumMap.shape[1]) # Regularization for the voxel model reg_m2 = regularization.Sparse( mesh, active_cells=actv, mapping=wires.hetero, gradient_type="components" ) reg_m2.set_weights(weights=wires.hetero * wr) reg_m2.norms = [0, 0, 0, 0] reg_m2.reference_model = np.zeros(sumMap.shape[1]) reg = reg_m1 + reg_m2 # Data misfit function dmis = data_misfit.L2DataMisfit(simulation=prob, data=data) # Add directives to the inversion opt = optimization.ProjectedGNCG( maxIter=100, lower=0.0, upper=1.0, maxIterLS=20, cg_maxiter=10, cg_rtol=1e-3, tolG=1e-3, eps=1e-6, ) invProb = inverse_problem.BaseInvProblem(dmis, reg, opt) betaest = directives.BetaEstimate_ByEig(beta0_ratio=1e-2) # Here is where the norms are applied # Use pick a threshold parameter empirically based on the distribution of # model parameters IRLS = directives.UpdateIRLS(f_min_change=1e-3) update_Jacobi = directives.UpdatePreconditioner() inv = inversion.BaseInversion(invProb, directiveList=[IRLS, betaest, update_Jacobi]) # Run the inversion m0 = np.ones(sumMap.shape[1]) * 1e-4 # Starting model prob.model = m0 mrecSum = inv.run(m0) if plotIt: mesh.plot_3d_slicer( actvMap * model, aspect="equal", zslice=30, pcolor_opts={"cmap": "inferno_r"}, transparent="slider", ) mesh.plot_3d_slicer( actvMap * sumMap * mrecSum, aspect="equal", zslice=30, pcolor_opts={"cmap": "inferno_r"}, transparent="slider", ) if __name__ == "__main__": run() plt.show() .. rst-class:: sphx-glr-timing **Total running time of the script:** (0 minutes 22.429 seconds) **Estimated memory usage:** 342 MB .. _sphx_glr_download_content_user-guide_examples_01-maps_plot_sumMap.py: .. only:: html .. container:: sphx-glr-footer sphx-glr-footer-example .. container:: sphx-glr-download sphx-glr-download-jupyter :download:`Download Jupyter notebook: plot_sumMap.ipynb ` .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: plot_sumMap.py ` .. container:: sphx-glr-download sphx-glr-download-zip :download:`Download zipped: plot_sumMap.zip ` .. only:: html .. rst-class:: sphx-glr-signature `Gallery generated by Sphinx-Gallery `_